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SRX12706345: RNA-Seq of Gansu red deer: antler cartilage at rapid growth stage (60d)
1 ILLUMINA (Illumina HiSeq 2500) run: 34.7M spots, 10.3G bases, 2.9Gb downloads

Design: The cartilage tissues in the antler tips of Gansu red deer at rapid growth stage (60d) were collected from three individuals for RNA extraction. Total RNA was extracted using TRIzol Reagent according to the manufacturers protocol, then used for sequencing on Illumina 2500 platform. The sequencing data was analyzed to identify known and novel unigenes, differentially expressed genes, and conduct function annotation.
Submitted by: Qinghai University
Study: Transcriptome profiles of velvet antler in Gansu red deer
show Abstracthide Abstract
The porpurs of this study is to describe the molecular processes related to antler rapid growth. This study detected mRNAs expressed in primary, rapid, and ossified stages of antlers through RNA-Seq method. We totally obtained 24,778 unigenes in three libraries, including 2,722 differently expressed unigenes. After filtering, 488 DEGs were selected for further study. Most of thses genes annotated in pathway in cancer and P13K-Akt signaling pathway. Since the behavior of velvet antler at rapid growth stage is very similar to the expansion of cancer cells, DEGs annotated to those pathways may play role in antler development. RNA-Seq is a powerful method to explore genes expressed in cells, tissues and organs at different developent stages. Studying the identified genes in this study will provide further insights into the molecular mechanisms controlling antler development.
Sample: RNA-Seq of Gansu red deer: antler cartilage at rapid growth stage (60d)
SAMN22417625 • SRS10656266 • All experiments • All runs
Organism: Cervus elaphus
Library:
Name: d60
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: RT-PCR
Layout: PAIRED
Runs: 1 run, 34.7M spots, 10.3G bases, 2.9Gb
Run# of Spots# of BasesSizePublished
SRR1650351134,665,41610.3G2.9Gb2022-03-19

ID:
17284689

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